CSRMatrixMPI.hpp
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33 #ifndef STRUMPACK_CSRMATRIX_MPI_HPP
34 #define STRUMPACK_CSRMATRIX_MPI_HPP
35 
36 #include <vector>
37 #include <tuple>
38 #include <memory>
39 
40 #include "CSRMatrix.hpp"
41 #include "misc/MPIWrapper.hpp"
42 #include "dense/BLASLAPACKWrapper.hpp"
43 #include "CSRGraph.hpp"
44 
45 
46 namespace strumpack {
47 
48  template<typename scalar_t,typename integer_t> class SPMVBuffers {
49  public:
50  bool initialized = false;
51  std::vector<integer_t> sranks, rranks, soff, roffs, sind;
52  std::vector<scalar_t> sbuf, rbuf;
53  // for each off-diagonal entry spmv_prbuf stores the
54  // corresponding index in the receive buffer
55  std::vector<integer_t> prbuf;
56  };
57 
58 
71  template<typename scalar_t,typename integer_t>
72  class CSRMatrixMPI : public CompressedSparseMatrix<scalar_t,integer_t> {
76  using real_t = typename RealType<scalar_t>::value_type;
79 
80  public:
81  CSRMatrixMPI();
82  CSRMatrixMPI(integer_t local_rows, const integer_t* row_ptr,
83  const integer_t* col_ind, const scalar_t* values,
84  const integer_t* dist, MPIComm comm, bool symm_sparse);
85  CSRMatrixMPI(integer_t rows, integer_t local_rows, integer_t local_nnz,
86  const integer_t* dist, MPIComm comm, bool symm_sparse);
87  CSRMatrixMPI(integer_t lrows, const integer_t* d_ptr,
88  const integer_t* d_ind, const scalar_t* d_val,
89  const integer_t* o_ptr, const integer_t* o_ind,
90  const scalar_t* o_val, const integer_t* garray,
91  MPIComm comm, bool symm_sparse=false);
93  bool only_at_root);
94 
95  integer_t local_nnz() const { return lnnz_; }
96  integer_t local_rows() const { return lrows_; }
97  integer_t begin_row() const { return brow_; }
98  integer_t end_row() const { return brow_ + lrows_; }
99 
100  // TODO return reference???
101  const MPIComm& Comm() const { return comm_; }
102  // MPIComm Comm() const { return comm_; }
103  MPI_Comm comm() const { return comm_.comm(); }
104 
105  const std::vector<integer_t>& dist() const { return dist_; }
106  const integer_t& dist(std::size_t p) const {
107  assert(p < dist_.size());
108  return dist_[p];
109  }
110 
111  real_t norm1() const override;
112 
113  void spmv(const DenseM_t& x, DenseM_t& y) const override;
114  void spmv(const scalar_t* x, scalar_t* y) const override;
115 
116  void permute(const integer_t* iorder, const integer_t* order) override;
117 
118  std::unique_ptr<CSRMatrix<scalar_t,integer_t>> gather() const;
119  std::unique_ptr<CSRGraph<integer_t>> gather_graph() const;
120 
121 
136  Match_t matching(MatchingJob job, bool apply=true) override;
137 
138  Equil_t equilibration() const override;
139 
140  void equilibrate(const Equil_t&) override;
141 
142  void permute_columns(const std::vector<integer_t>& perm) override;
143 
144  void symmetrize_sparsity() override;
145 
146  int read_matrix_market(const std::string& filename) override;
147 
148  real_t max_scaled_residual(const DenseM_t& x, const DenseM_t& b)
149  const override;
150 
151  real_t max_scaled_residual(const scalar_t* x, const scalar_t* b)
152  const override;
153 
154  std::unique_ptr<CSRMatrixMPI<scalar_t,integer_t>>
155  add_missing_diagonal(const scalar_t& s) const;
156 
158  get_sub_graph(const std::vector<integer_t>& perm,
159  const std::vector<std::pair<integer_t,integer_t>>&
160  graph_ranges) const;
161 
163  extract_graph(int ordering_level,
164  integer_t lo, integer_t hi) const override {
165  assert(false);
166  return CSRGraph<integer_t>();
167  }
168 
169  void print() const override;
170  void print_dense(const std::string& name) const override;
171  void print_matrix_market(const std::string& filename) const override;
172  void check() const;
173 
174 
175 #ifndef DOXYGEN_SHOULD_SKIP_THIS
176  // implement outside of this class
177  void extract_separator
178  (integer_t, const std::vector<std::size_t>&,
179  const std::vector<std::size_t>&, DenseM_t&, int) const override {}
180  void extract_separator_2d
181  (integer_t, const std::vector<std::size_t>&,
182  const std::vector<std::size_t>&, DistM_t&) const override {}
183  void extract_front
184  (DenseM_t&, DenseM_t&, DenseM_t&, integer_t,
185  integer_t, const std::vector<integer_t>&, int) const override {}
186  void push_front_elements
187  (integer_t, integer_t, const std::vector<integer_t>&,
188  std::vector<Triplet<scalar_t>>&, std::vector<Triplet<scalar_t>>&,
189  std::vector<Triplet<scalar_t>>&) const override {}
190  void set_front_elements
191  (integer_t, integer_t, const std::vector<integer_t>&,
192  Triplet<scalar_t>*, Triplet<scalar_t>*,
193  Triplet<scalar_t>*) const override {}
194  void count_front_elements
195  (integer_t, integer_t, const std::vector<integer_t>&,
196  std::size_t&, std::size_t&, std::size_t&) const override {}
197 
198  void extract_F11_block
199  (scalar_t*, integer_t, integer_t, integer_t,
200  integer_t, integer_t) const override {}
201  void extract_F12_block
202  (scalar_t*, integer_t, integer_t, integer_t, integer_t,
203  integer_t, const integer_t*) const override {}
204  void extract_F21_block
205  (scalar_t*, integer_t, integer_t, integer_t, integer_t,
206  integer_t, const integer_t*) const override {}
207  void front_multiply
208  (integer_t, integer_t, const std::vector<integer_t>&,
209  const DenseM_t&, DenseM_t&, DenseM_t&, int depth) const override {}
210  void front_multiply_2d
211  (integer_t, integer_t, const std::vector<integer_t>&, const DistM_t&,
212  DistM_t&, DistM_t&, int) const override {}
213  void front_multiply_2d
214  (Trans op, integer_t, integer_t, const std::vector<integer_t>&,
215  const DistM_t&, DistM_t&, int) const override {}
216 
217  CSRGraph<integer_t> extract_graph_sep_CB
218  (int ordering_level, integer_t lo, integer_t hi,
219  const std::vector<integer_t>& upd) const override {
220  return CSRGraph<integer_t>(); };
221  CSRGraph<integer_t> extract_graph_CB_sep
222  (int ordering_level, integer_t lo, integer_t hi,
223  const std::vector<integer_t>& upd) const override {
224  return CSRGraph<integer_t>(); };
225  CSRGraph<integer_t> extract_graph_CB
226  (int ordering_level, const std::vector<integer_t>& upd) const override {
227  return CSRGraph<integer_t>(); };
228 
229  void front_multiply_F11
230  (Trans op, integer_t slo, integer_t shi,
231  const DenseM_t& R, DenseM_t& S, int depth) const override {};
232  void front_multiply_F12
233  (Trans op, integer_t slo, integer_t shi, const std::vector<integer_t>& upd,
234  const DenseM_t& R, DenseM_t& S, int depth) const override {};
235  void front_multiply_F21
236  (Trans op, integer_t slo, integer_t shi, const std::vector<integer_t>& upd,
237  const DenseM_t& R, DenseM_t& S, int depth) const override {};
238 #endif //DOXYGEN_SHOULD_SKIP_THIS
239 
240  protected:
241  void split_diag_offdiag();
242  void setup_spmv_buffers() const;
243 
244  // TODO use MPIComm
245  MPIComm comm_;
246 
252  std::vector<integer_t> dist_;
253 
258  std::vector<integer_t> offdiag_start_;
259 
260  integer_t brow_; // = dist_[rank], dist_[rank+1]
261  integer_t lrows_; // = erow_ - brow_
262  integer_t lnnz_; // = ptr_[local_rows]
263 
264  mutable SPMVBuffers<scalar_t,integer_t> spmv_bufs_;
265 
266 
270  void scale(const std::vector<scalar_t>& lDr,
271  const std::vector<scalar_t>& gDc) override;
272  void scale_real(const std::vector<real_t>& lDr,
273  const std::vector<real_t>& gDc) override;
274 
275  void sort_rows();
276 
277  using CSM_t::n_;
278  using CSM_t::nnz_;
279  using CSM_t::ptr_;
280  using CSM_t::ind_;
281  using CSM_t::val_;
282  using CSM_t::symm_sparse_;
283  };
284 
296  template<typename scalar_t, typename integer_t, typename cast_t>
297  CSRMatrixMPI<cast_t,integer_t>
299 
300 } // end namespace strumpack
301 
302 #endif // STRUMPACK_CSRMATRIX_MPI_HPP
Contains the compressed sparse row matrix storage class.
Contains some simple C++ MPI wrapper utilities.
Definition: CompressedSparseMatrix.hpp:49
Block-row distributed compressed sparse row storage.
Definition: CSRMatrixMPI.hpp:72
void permute(const integer_t *iorder, const integer_t *order) override
void spmv(const scalar_t *x, scalar_t *y) const override
void spmv(const DenseM_t &x, DenseM_t &y) const override
Match_t matching(MatchingJob job, bool apply=true) override
Class for storing a compressed sparse row matrix (single node).
Definition: CSRMatrix.hpp:55
Abstract base class for compressed sparse matrix storage.
Definition: CompressedSparseMatrix.hpp:149
bool symm_sparse() const
Definition: CompressedSparseMatrix.hpp:284
This class represents a matrix, stored in column major format, to allow direct use of BLAS/LAPACK rou...
Definition: DenseMatrix.hpp:138
2D block cyclicly distributed matrix, as used by ScaLAPACK.
Definition: DistributedMatrix.hpp:84
Definition: CompressedSparseMatrix.hpp:97
Wrapper class around an MPI_Comm object.
Definition: MPIWrapper.hpp:194
MPI_Comm comm() const
Definition: MPIWrapper.hpp:261
Definition: CompressedSparseMatrix.hpp:56
Definition: CSRMatrixMPI.hpp:48
Definition: StrumpackOptions.hpp:43
MatchingJob
Definition: StrumpackOptions.hpp:119
Trans
Definition: DenseMatrix.hpp:51
CSRMatrix< cast_t, integer_t > cast_matrix(const CSRMatrix< scalar_t, integer_t > &mat)