CSRMatrixMPI.hpp
Go to the documentation of this file.
1/*
2 * STRUMPACK -- STRUctured Matrices PACKage, Copyright (c) 2014, The
3 * Regents of the University of California, through Lawrence Berkeley
4 * National Laboratory (subject to receipt of any required approvals
5 * from the U.S. Dept. of Energy). All rights reserved.
6 *
7 * If you have questions about your rights to use or distribute this
8 * software, please contact Berkeley Lab's Technology Transfer
9 * Department at TTD@lbl.gov.
10 *
11 * NOTICE. This software is owned by the U.S. Department of Energy. As
12 * such, the U.S. Government has been granted for itself and others
13 * acting on its behalf a paid-up, nonexclusive, irrevocable,
14 * worldwide license in the Software to reproduce, prepare derivative
15 * works, and perform publicly and display publicly. Beginning five
16 * (5) years after the date permission to assert copyright is obtained
17 * from the U.S. Department of Energy, and subject to any subsequent
18 * five (5) year renewals, the U.S. Government is granted for itself
19 * and others acting on its behalf a paid-up, nonexclusive,
20 * irrevocable, worldwide license in the Software to reproduce,
21 * prepare derivative works, distribute copies to the public, perform
22 * publicly and display publicly, and to permit others to do so.
23 *
24 * Developers: Pieter Ghysels, Francois-Henry Rouet, Xiaoye S. Li.
25 * (Lawrence Berkeley National Lab, Computational Research
26 * Division).
27 */
33#ifndef STRUMPACK_CSRMATRIX_MPI_HPP
34#define STRUMPACK_CSRMATRIX_MPI_HPP
35
36#include <vector>
37#include <tuple>
38#include <memory>
39
40#include "CSRMatrix.hpp"
41#include "misc/MPIWrapper.hpp"
42#include "dense/BLASLAPACKWrapper.hpp"
43#include "CSRGraph.hpp"
44
45
46namespace strumpack {
47
48 template<typename scalar_t,typename integer_t> class SPMVBuffers {
49 public:
50 bool initialized = false;
51 std::vector<integer_t> sranks, rranks, soff, roffs, sind;
52 std::vector<scalar_t> sbuf, rbuf;
53 // for each off-diagonal entry spmv_prbuf stores the
54 // corresponding index in the receive buffer
55 std::vector<integer_t> prbuf;
56 };
57
58
71 template<typename scalar_t,typename integer_t>
72 class CSRMatrixMPI : public CompressedSparseMatrix<scalar_t,integer_t> {
76 using real_t = typename RealType<scalar_t>::value_type;
79
80 public:
82 CSRMatrixMPI(integer_t local_rows, const integer_t* row_ptr,
83 const integer_t* col_ind, const scalar_t* values,
84 const integer_t* dist, MPIComm comm, bool symm_sparse);
85 CSRMatrixMPI(integer_t rows, integer_t local_rows, integer_t local_nnz,
86 const integer_t* dist, MPIComm comm, bool symm_sparse);
87 CSRMatrixMPI(integer_t lrows, const integer_t* d_ptr,
88 const integer_t* d_ind, const scalar_t* d_val,
89 const integer_t* o_ptr, const integer_t* o_ind,
90 const scalar_t* o_val, const integer_t* garray,
91 MPIComm comm, bool symm_sparse=false);
93 bool only_at_root);
94
95 integer_t local_nnz() const { return lnnz_; }
96 integer_t local_rows() const { return lrows_; }
97 integer_t begin_row() const { return brow_; }
98 integer_t end_row() const { return brow_ + lrows_; }
99
100 // TODO return reference???
101 const MPIComm& Comm() const { return comm_; }
102 // MPIComm Comm() const { return comm_; }
103 MPI_Comm comm() const { return comm_.comm(); }
104
105 const std::vector<integer_t>& dist() const { return dist_; }
106 const integer_t& dist(std::size_t p) const {
107 assert(p < dist_.size());
108 return dist_[p];
109 }
110
111 real_t norm1() const override;
112
113 void spmv(const DenseM_t& x, DenseM_t& y) const override;
114 void spmv(const scalar_t* x, scalar_t* y) const override;
115
116 void permute(const integer_t* iorder, const integer_t* order) override;
117
118 std::unique_ptr<CSRMatrix<scalar_t,integer_t>> gather() const;
119 std::unique_ptr<CSRGraph<integer_t>> gather_graph() const;
120
121
136 Match_t matching(MatchingJob job, bool apply=true) override;
137
138 Equil_t equilibration() const override;
139
140 void equilibrate(const Equil_t&) override;
141
142 void permute_columns(const std::vector<integer_t>& perm) override;
143
144 void symmetrize_sparsity() override;
145
146 int read_matrix_market(const std::string& filename) override;
147
148 real_t max_scaled_residual(const DenseM_t& x, const DenseM_t& b)
149 const override;
150
151 real_t max_scaled_residual(const scalar_t* x, const scalar_t* b)
152 const override;
153
154 std::unique_ptr<CSRMatrixMPI<scalar_t,integer_t>>
155 add_missing_diagonal(const scalar_t& s) const;
156
158 get_sub_graph(const std::vector<integer_t>& perm,
159 const std::vector<std::pair<integer_t,integer_t>>&
160 graph_ranges) const;
161
163 extract_graph(int ordering_level,
164 integer_t lo, integer_t hi) const override {
165 assert(false);
166 return CSRGraph<integer_t>();
167 }
168
169 void print() const override;
170 void print_dense(const std::string& name) const override;
171 void print_matrix_market(const std::string& filename) const override;
172 void check() const;
173
174
175#ifndef DOXYGEN_SHOULD_SKIP_THIS
176 // implement outside of this class
177 void extract_separator
178 (integer_t, const std::vector<std::size_t>&,
179 const std::vector<std::size_t>&, DenseM_t&, int) const override {}
180 void extract_separator_2d
181 (integer_t, const std::vector<std::size_t>&,
182 const std::vector<std::size_t>&, DistM_t&) const override {}
183 void extract_front
184 (DenseM_t&, DenseM_t&, DenseM_t&, integer_t,
185 integer_t, const std::vector<integer_t>&, int) const override {}
186 void push_front_elements
187 (integer_t, integer_t, const std::vector<integer_t>&,
188 std::vector<Triplet<scalar_t>>&, std::vector<Triplet<scalar_t>>&,
189 std::vector<Triplet<scalar_t>>&) const override {}
190 void set_front_elements
191 (integer_t, integer_t, const std::vector<integer_t>&,
192 Triplet<scalar_t>*, Triplet<scalar_t>*,
193 Triplet<scalar_t>*) const override {}
194 void count_front_elements
195 (integer_t, integer_t, const std::vector<integer_t>&,
196 std::size_t&, std::size_t&, std::size_t&) const override {}
197
198 void extract_F11_block
199 (scalar_t*, integer_t, integer_t, integer_t,
200 integer_t, integer_t) const override {}
201 void extract_F12_block
202 (scalar_t*, integer_t, integer_t, integer_t, integer_t,
203 integer_t, const integer_t*) const override {}
204 void extract_F21_block
205 (scalar_t*, integer_t, integer_t, integer_t, integer_t,
206 integer_t, const integer_t*) const override {}
207 void front_multiply
208 (integer_t, integer_t, const std::vector<integer_t>&,
209 const DenseM_t&, DenseM_t&, DenseM_t&, int depth) const override {}
210 void front_multiply_2d
211 (integer_t, integer_t, const std::vector<integer_t>&, const DistM_t&,
212 DistM_t&, DistM_t&, int) const override {}
213 void front_multiply_2d
214 (Trans op, integer_t, integer_t, const std::vector<integer_t>&,
215 const DistM_t&, DistM_t&, int) const override {}
216
217 CSRGraph<integer_t> extract_graph_sep_CB
218 (int ordering_level, integer_t lo, integer_t hi,
219 const std::vector<integer_t>& upd) const override {
220 return CSRGraph<integer_t>(); };
221 CSRGraph<integer_t> extract_graph_CB_sep
222 (int ordering_level, integer_t lo, integer_t hi,
223 const std::vector<integer_t>& upd) const override {
224 return CSRGraph<integer_t>(); };
225 CSRGraph<integer_t> extract_graph_CB
226 (int ordering_level, const std::vector<integer_t>& upd) const override {
227 return CSRGraph<integer_t>(); };
228
229 void front_multiply_F11
230 (Trans op, integer_t slo, integer_t shi,
231 const DenseM_t& R, DenseM_t& S, int depth) const override {};
232 void front_multiply_F12
233 (Trans op, integer_t slo, integer_t shi, const std::vector<integer_t>& upd,
234 const DenseM_t& R, DenseM_t& S, int depth) const override {};
235 void front_multiply_F21
236 (Trans op, integer_t slo, integer_t shi, const std::vector<integer_t>& upd,
237 const DenseM_t& R, DenseM_t& S, int depth) const override {};
238#endif //DOXYGEN_SHOULD_SKIP_THIS
239
240 protected:
241 void split_diag_offdiag();
242 void setup_spmv_buffers() const;
243
244 // TODO use MPIComm
245 MPIComm comm_;
246
252 std::vector<integer_t> dist_;
253
258 std::vector<integer_t> offdiag_start_;
259
260 integer_t brow_; // = dist_[rank], dist_[rank+1]
261 integer_t lrows_; // = erow_ - brow_
262 integer_t lnnz_; // = ptr_[local_rows]
263
264 mutable SPMVBuffers<scalar_t,integer_t> spmv_bufs_;
265
266
270 void scale(const std::vector<scalar_t>& lDr,
271 const std::vector<scalar_t>& gDc) override;
272 void scale_real(const std::vector<real_t>& lDr,
273 const std::vector<real_t>& gDc) override;
274
275 void sort_rows();
276
277 using CSM_t::n_;
278 using CSM_t::nnz_;
279 using CSM_t::ptr_;
280 using CSM_t::ind_;
281 using CSM_t::val_;
282 using CSM_t::symm_sparse_;
283 };
284
296 template<typename scalar_t, typename integer_t, typename cast_t>
297 CSRMatrixMPI<cast_t,integer_t>
299
300} // end namespace strumpack
301
302#endif // STRUMPACK_CSRMATRIX_MPI_HPP
Contains the compressed sparse row matrix storage class.
Contains some simple C++ MPI wrapper utilities.
Definition: CompressedSparseMatrix.hpp:49
Block-row distributed compressed sparse row storage.
Definition: CSRMatrixMPI.hpp:72
void permute(const integer_t *iorder, const integer_t *order) override
void spmv(const scalar_t *x, scalar_t *y) const override
void spmv(const DenseM_t &x, DenseM_t &y) const override
Match_t matching(MatchingJob job, bool apply=true) override
Class for storing a compressed sparse row matrix (single node).
Definition: CSRMatrix.hpp:55
Abstract base class for compressed sparse matrix storage.
Definition: CompressedSparseMatrix.hpp:149
bool symm_sparse() const
Definition: CompressedSparseMatrix.hpp:284
This class represents a matrix, stored in column major format, to allow direct use of BLAS/LAPACK rou...
Definition: DenseMatrix.hpp:138
2D block cyclicly distributed matrix, as used by ScaLAPACK.
Definition: DistributedMatrix.hpp:84
Definition: CompressedSparseMatrix.hpp:97
Wrapper class around an MPI_Comm object.
Definition: MPIWrapper.hpp:194
MPI_Comm comm() const
Definition: MPIWrapper.hpp:261
Definition: CompressedSparseMatrix.hpp:56
Definition: CSRMatrixMPI.hpp:48
Definition: StrumpackOptions.hpp:43
CSRMatrix< cast_t, integer_t > cast_matrix(const CSRMatrix< scalar_t, integer_t > &mat)
MatchingJob
Definition: StrumpackOptions.hpp:119
Trans
Definition: DenseMatrix.hpp:51